https://toolset.com/forums/topic/taxonomy-glitch/page/2/#post-614907
I am not sure, but I am sure that you should not make this changes in the parent theme.
This will be removed as soon you update it.
The correct way would be to use the Child theme.
Please download a Fresh version of your theme and add all changes to the child theme, if possible.
This will make your future development easier and safer.
https://toolset.com/forums/topic/taxonomy-glitch/page/2/#post-614908
Yes, it surely has an effect.
That feature seems to alter the native hierarchy of the terms so it will obviously affect them elsewhere too, where that hierarchy is called.
Deactivating the Plugin won't be enough. The settings instead need to be brought to what they where before, first.
As example, a non-parent that was made primary, should most likely be set back to what it was before.
Altering the Taxonomy in this way will produce unexpected results as it alters the native hierarchy.
https://toolset.com/forums/topic/taxonomy-glitch/page/2/#post-614916
I apologize that I did not see that thread, and was not familiar with the feature of this plugin.
We don't produce YOAST, hence I do not work with it daily.
https://toolset.com/forums/topic/taxonomy-glitch/page/2/#post-614976
According to this, we are still on the spot that this Terms are altered by YOAST, correct?
Since it works for all terms, it must be an exception of this very term, which is most likely due to settings saved against those terms, which alter the hierarchy.
Can I ask, if when you alter the terms names by just one character (Oceana instead of Oceania, or Nova Selandia instead of Nova Zelandia)... does it work then?
That would be the ultimate proof that something, in either a theme or plugin, is altering those exact terms.
There are several places this can happen in your install as we saw.
Can you let me know what the result is of above test?
If this works, I suggest to delete the existing terms which do not work, and recreate them after checking that neither the theme or another plugin alters those terms.
Before you delete and recreate them, also make sure to reset all specific setting you might have applied against them, such as "primary" settings of the term by YOAST.