Thank you for sharing the access details.
I'm going to split my reply into two main parts:
Part 1:
In the admin area, I checked the intermediary post type 'Reserveringen' and found this one post under it:
"Reserveringen: 7621 – 1899"
It shows a fatal error when trying to edit because the data stored in the date field(s) of this specific post is not correct.
I created a new connection between the 'Groenbaard 1936' Schip and the 'Meppel' Ligplaats and a new Reserveringen "Reserveringen: 8062 – 7487" was created.
If you'll try to edit it in the admin area, you won't see the same fatal error.
Also, I see that the relationship form 'Reserveringsformulier' is added on the single 'Ligplaats' post pages. The current 'Ligplaatsen' is automatically selected which makes sense and the user can use the 'Schepen' field to select the Schip post to make the reservation. If this 'Schepen' field is also automatically selected, the user will have no choice to select which Schip to choose from.
Part 2:
Thinking the whole requirement through, I believe the current setup won't work effectively and it would be better to adopt Nigel's second approach recommendation.
In the current setup, a ship and a port post, are connected directly through a many-to-many relationship 'Reserveringen'. But if in the future another user wants to make another reservation with the same ship and same port it won't be possible, because 1 connection between them already exists.
The way many-to-many relationships work, a connection between two specific posts can't be created again and a connection is not automatically disconnected after a certain time either.
A better setup would be:
3 Post types:
a). Ships
b). Ports
c). Reservations
2 one-to-one relationships:
a). Reservations <-> Ships
a). Reservations <-> Ports
This way each post in the 'Reservations' post type will be a truly unique and independent entity. And information about a particular reservation like start and end dates will be saved with this 'Reservations' post type.
I hope this helps and please let me know if you need further assistance.