Hello. Thank you for contacting the Toolset support.
Can you please share access details first so I can review how exactly you configured your custom search with checkboxes field?
*** Please make a FULL BACKUP of your database and website.***
I would also eventually need to request temporary access (WP-Admin and FTP) to your site. Preferably to a test site where the problem has been replicated if possible in order to be of better help and check if some configurations might need to be changed.
I have set the next reply to private which means only you and I have access to it.