I have discussed this as well with the developers and the issue persists.
The problem with the ID is that in WordPress database tables, it's an AUTO_INCREMENT column, which means that whenever you import a post, its ID changes. Always. We have no control over the value, and even if we try to set the IDs manually on import, there is no guarantee that the ID of the imported post isn't taken already.
Theoretically speaking, this could be solved by some sort of a temporary mapping of the old (import) IDs and new IDs and using the import IDs when importing associations between posts.
But it would be a lot of hassle with a heightened risk of creating some data integrity issues.
This and other reasons are why Toolset relies on the GUID instead, which is stable unless some third-party software explicitly changes with it. The alternative of using the post name is to make things "easier", although there's also a certain risk of ambiguity, which you already noticed in your workflow.
What you could do for now is suggest such a feature to https://toolset.com/home/contact-us/suggest-a-new-feature-for-toolset/, however that will not help you immediately.
As for now, if your CSV uses the ID I'd suggest running those thru a small program, or eventually, the app with which you created them allows you editing the CSV values "in bulk", so too, for example, generate a GUID for each of the relatable posts and update the child posts entries with that data generated.
Your requirements are to have a name or GUID of the intermediary and parent posts.
Then you can update your CSV to match this requirement: https://toolset.com/documentation/user-guides/export-import/importing-content-from-csv-with-post-relationships/#how-toolset-associations-can-be-added-to-a-csv
Looking at your example CSV, registrations type is a child to both other types, hence you need to update the data of that post type to have a meta field with key _toolset_associations_%%relationship_slug%% and value {!{parent_1_title}!}, {!{parent_2_title}!} (or GUID)
Currently, if you import this you can only do it with the name or GUID of the post to be connected.
I will run tests myself, but I need to know:
- the data you have, is in the <em<exact format as you show in the screenshot?
- could you send me a sample with connections?
I will, considering your details, create a local test with such data (I can generate it myself if I know exactly how it is structured, or maybe you can provide a sample of yours)
Maybe I can suggest some tricks to convert it or import it successfully.
I've enabled private replies in case you have sample data you can share.