Tell us what you are trying to do?
I am trying to embed a custom shortcode within a Toolset view. The problem is, my custom shortcode is getting exceuted regardless of it's placement within the view output. This is breaking my view output as my results are appearing before any custom search control(search bar, sorting, pagination).
I suspect your custom shortcode is echoing content, instead of returning it, so the output appears out of sequence. That's what your symptoms sound like.